Commit 0a99217d authored by Florian Centler's avatar Florian Centler
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augmenting README.md

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......@@ -73,7 +73,7 @@ The FBA models stem from *S. Magnúsdóttir et al., “Generation of genome-scal
### Simulation Output
Two files are generated at the end of the simulation with a date and time stamp in the filename indicating the start of the simulation. Both files hold Matlab data structures. The file `*_restartInit.mat` records the final state of the simulator and can be used as the initial conditions to continue the simulation in a subsequent run of µbialSim. The other file holds the simulated trajectory in the Matlab structure trajectory. The fields `time`, `compounds`, `biomass`, and `mu` hold the time, compound concentrations, biomass concentrations, and specific growth rates for each integration step. The field `FBA` stores data for each FBA model, including the temporal dynamics of all metabolic fluxes, and the mass balance for all exchange reactions.
Two files are generated at the end of the simulation with a date and time stamp in the filename indicating the start of the simulation. Both files hold Matlab data structures. The file `*_restartInit.mat` records the final state of the simulator and can be used as the initial conditions to continue the simulation in a subsequent run of µbialSim. The other file holds the simulated trajectory in the Matlab structure trajectory. The fields `time`, `compounds`, `biomass`, and `mu` hold the time, compound concentrations, biomass concentrations, and specific growth rates for each integration step. The field `FBA` stores data for each FBA model, including the temporal dynamics of all metabolic fluxes, and the mass balance for all exchange reactions. The field `limitingFluxes` stores over time those reactions, for which thecurrent flux is identical to its current flux boundary (upper or lower). These are typically the growth-limiting fluxes.
Additionally, once the simulation is finished, the trajectory is automatically visualized in three Matlab figures detailing the evolution of compound and biomass concentrations as well as exchange fluxes for all species.
## Built With
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