Merge branch 'release_5.11' into 'master'

Release 5.11

See merge request mhm/mhm!60

.gitignore

 # Created by .ignore support plugin (hsz.mobi)
 
 # Exclusions
+./mhm
 *.g90
 *.o
 *.mod
 *.a
 *.so
-*.nc
-test_basin/
-test_basin_2/
+src/*/*.release/
+src/*/*.debug/
+test_domain/output_b1/
+test_domain_2/output/
+test_domain/restart/
+test_domain_2/restart/
 *prog_for_check
+*terminal
 
 ### Python template
 # Byte-compiled / optimized / DLL files
@@ -607,3 +612,6 @@ bh_unicode_properties.cache
 # Sublime-github package stores a github token in this file
 # https://packagecontrol.io/packages/sublime-github
 GitHub.sublime-settings
+
+# VSCode settings file
+.vscode/

.gitlab-ci.yml

+# to use the env-var "GIT_CLONE_PATH", set the following in
+# ./gitlab-runner/config.toml under [[runners]]:
+#   [runners.custom_build_dir]
+#     enabled = true
+# This will prevent git clone conflicts for jobs ran in parallel
+
+stages:
+  - info
+  - build
+  - valgrind
+  - test
+  - coverage
+  - deploy
+
+show-env-vars:
+  stage: info
+  variables:
+    GIT_STRATEGY: none
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME
+    SEP: "##################################################################"
+    S00: "commit date - "
+    S01: "project: ${CI_PROJECT_PATH}"
+    S02: "branch: ${CI_COMMIT_REF_NAME}"
+    S03: "commit: ${CI_COMMIT_SHA}"
+    S04: "commit msg: ${CI_COMMIT_MESSAGE}"
+    S05: "clone base path: "
+    S06: "runner token: ${CI_RUNNER_SHORT_TOKEN}"
+  script:
+    - echo -e "${SEP}\n${S00}$(date)\n${SEP}\n${S01}\n${S02}\n${S03}\n${S04}\n${SEP}\n${S05}${GIT_CLONE_PATH}\n${S06}\n${SEP}"
+
+documentation:
+  only:
+    - develop
+  stage: build
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  script:
+    - module load foss/2019b
+    - module load texlive/2019
+    - module load Graphviz/2.42.2
+    - module load Anaconda3
+    - source activate /global/apps/mhm_checks/mhm_env
+    # use doxygen from the mhm_env conda environment
+    - doxygen doc/doxygen.config > doxygen_log_dev.txt
+    # create pdf documentation
+    - cd latex/ && make > ../doxygen_latex_dev.txt
+    - cp refman.pdf ../html/mhm_doc.pdf
+    - cp refman.pdf ../mhm_doc_dev.pdf
+    - cd .. && mv html html_dev
+    - mv doxygen_warn.txt doxygen_warn_dev.txt
+    - rm -rf latex
+    # same for master
+    - git checkout master
+    - test -f doc/doxygen-1.8.8.config && cp doc/doxygen-1.8.8.config doc/doxygen.config
+    - doxygen doc/doxygen.config > doxygen_log_mas.txt
+    - cd latex/ && make > ../doxygen_latex_mas.txt
+    - cp refman.pdf ../html/mhm_doc.pdf
+    - cp refman.pdf ../mhm_doc_mas.pdf
+    - cd .. && mv html html_mas
+    # care about warnings file (maybe missing on master)
+    - |
+      if [ -f doxygen_warn.txt ]; then
+        mv doxygen_warn.txt doxygen_warn_mas.txt
+      else
+        touch doxygen_warn_mas.txt
+      fi
+  artifacts:
+    name: "$CI_COMMIT_REF_NAME"
+    paths:
+      - html_dev
+      - mhm_doc_dev.pdf
+      - doxygen_log_dev.txt
+      - doxygen_latex_dev.txt
+      - doxygen_warn_dev.txt
+      - html_mas
+      - mhm_doc_mas.pdf
+      - doxygen_log_mas.txt
+      - doxygen_latex_mas.txt
+      - doxygen_warn_mas.txt
+  when: always
+
+cmake-nag62:
+  stage: build
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  script:
+    - source moduleLoadScripts/eve.nag62
+    - source CI-scripts/compile
+    - source CI-scripts/compile_debug
+  artifacts:
+    paths:
+    - mhm
+    - mhm_debug
+
+cmake-gcc73:
+  stage: build
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  script:
+    - source moduleLoadScripts/eve.gcc73
+    - source CI-scripts/compile
+    - source CI-scripts/compile_debug
+    - source CI-scripts/compile_OpenMP
+    - source CI-scripts/compile_OpenMP_debug
+  artifacts:
+    paths:
+    - mhm
+    - mhm_debug
+    - mhm_openmp
+    - mhm_openmp_debug
+
+cmake-gcc73MPI:
+  stage: build
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  script:
+    - source moduleLoadScripts/eve.gcc73MPI
+    - source CI-scripts/compile_MPI
+    - source CI-scripts/compile_MPI_debug
+  artifacts:
+    paths:
+    - mhm_mpi
+    - mhm_mpi_debug
+
+cmake-gcc83:
+  stage: build
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  script:
+    - source moduleLoadScripts/eve.gcc83
+    - source CI-scripts/compile
+    - source CI-scripts/compile_debug
+    - source CI-scripts/compile_OpenMP
+    - source CI-scripts/compile_OpenMP_debug
+  artifacts:
+    paths:
+    - mhm
+    - mhm_debug
+    - mhm_openmp
+    - mhm_openmp_debug
+
+cmake-gcc83MPI:
+  stage: build
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  script:
+    - source moduleLoadScripts/eve.gcc83MPI
+    - source CI-scripts/compile_MPI
+    - source CI-scripts/compile_MPI_debug
+  artifacts:
+    paths:
+    - mhm_mpi
+    - mhm_mpi_debug
+
+cmake-intel18:
+  stage: build
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  script:
+    - source moduleLoadScripts/eve.intel18
+    - source CI-scripts/compile
+    - source CI-scripts/compile_debug
+    - source CI-scripts/compile_OpenMP
+    - source CI-scripts/compile_OpenMP_debug
+  artifacts:
+    paths:
+    - mhm
+    - mhm_debug
+    - mhm_openmp
+    - mhm_openmp_debug
+
+cmake-intel18MPI:
+  stage: build
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  script:
+    - source moduleLoadScripts/eve.intel18MPI
+    - source CI-scripts/compile_MPI
+    - source CI-scripts/compile_MPI_debug
+  artifacts:
+    paths:
+    - mhm_mpi
+    - mhm_mpi_debug
+
+cmake-intel20:
+  stage: build
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  script:
+    - source moduleLoadScripts/eve.intel20
+    - source CI-scripts/compile
+    - source CI-scripts/compile_debug
+    - source CI-scripts/compile_OpenMP
+    - source CI-scripts/compile_OpenMP_debug
+  artifacts:
+    paths:
+    - mhm
+    - mhm_debug
+    - mhm_openmp
+    - mhm_openmp_debug
+
+cmake-intel20MPI:
+  stage: build
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  script:
+    - source moduleLoadScripts/eve.intel20MPI
+    - source CI-scripts/compile_MPI
+    - source CI-scripts/compile_MPI_debug
+  artifacts:
+    paths:
+    - mhm_mpi
+    - mhm_mpi_debug
+
+# only check latest compiler versions with valgrind
+# valgrind-gcc73:
+#   when: always
+#   stage: valgrind
+#   variables:
+#     GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+#   needs:
+#     - job: cmake-gcc73
+#       artifacts: true
+#   script:
+#     - source moduleLoadScripts/eve.gcc73
+#     - module load Anaconda3
+#     - source activate /global/apps/mhm_checks/mhm_env
+#     - valgrind --version
+#     - valgrind --tool=memcheck --leak-check=full --show-leak-kinds=all --track-origins=yes --verbose ./mhm_debug
+#     # execute mem-use check
+#     - valgrind --tool=massif --stacks=yes --time-unit=i --massif-out-file=massif.out.0 ./mhm_debug
+#     - ms_print massif.out.0
+#   artifacts:
+#     paths:
+#     - massif.out.0
+#
+# valgrind-intel18:
+#   when: always
+#   stage: valgrind
+#   variables:
+#     GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+#   needs:
+#     - job: cmake-intel18
+#       artifacts: true
+#   script:
+#     - source moduleLoadScripts/eve.intel18
+#     - module load Anaconda3
+#     - source activate /global/apps/mhm_checks/mhm_env
+#     - valgrind --version
+#     - valgrind --tool=memcheck --leak-check=full --show-leak-kinds=all --track-origins=yes --verbose ./mhm_debug
+#     # execute mem-use check
+#     - valgrind --tool=massif --stacks=yes --time-unit=i --massif-out-file=massif.out.0 ./mhm_debug
+#     - ms_print massif.out.0
+#   artifacts:
+#     paths:
+#     - massif.out.0
+
+valgrind-nag62:
+  when: always
+  stage: valgrind
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-nag62
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.nag62
+    - module load Anaconda3
+    - source activate /global/apps/mhm_checks/mhm_env
+    - valgrind --version
+    - valgrind --tool=memcheck --leak-check=full --show-leak-kinds=all --track-origins=yes --verbose ./mhm_debug
+    # execute mem-use check
+    - valgrind --tool=massif --stacks=yes --time-unit=i --massif-out-file=massif.out.0 ./mhm_debug
+    - ms_print massif.out.0
+  artifacts:
+    paths:
+    - massif.out.0
+
+valgrind-gcc83:
+  when: always
+  stage: valgrind
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-gcc83
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.gcc83
+    - module load Anaconda3
+    - source activate /global/apps/mhm_checks/mhm_env
+    - valgrind --version
+    - valgrind --tool=memcheck --leak-check=full --show-leak-kinds=all --track-origins=yes --verbose ./mhm_debug
+    # execute mem-use check
+    - valgrind --tool=massif --stacks=yes --time-unit=i --massif-out-file=massif.out.0 ./mhm_debug
+    - ms_print massif.out.0
+  artifacts:
+    paths:
+    - massif.out.0
+
+valgrind-intel20:
+  when: always
+  stage: valgrind
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-intel20
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.intel20
+    - module load Anaconda3
+    - source activate /global/apps/mhm_checks/mhm_env
+    - valgrind --version
+    - valgrind --tool=memcheck --leak-check=full --show-leak-kinds=all --track-origins=yes --verbose ./mhm_debug
+    # execute mem-use check
+    - valgrind --tool=massif --stacks=yes --time-unit=i --massif-out-file=massif.out.0 ./mhm_debug
+    - ms_print massif.out.0
+  artifacts:
+    paths:
+    - massif.out.0
+
+check-nag62:
+  when: always
+  stage: test
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-nag62
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.nag62
+    - source CI-scripts/pre_check
+    - python -u run_mhm_checks.py -l logs -e ../mhm
+  artifacts:
+    when: always
+    paths:
+    - check/logs/
+
+check-nag62DEBUG:
+  when: always
+  stage: test
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-nag62
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.nag62
+    - source CI-scripts/pre_check
+    # skip cases with optimization due to overflow in the random-number-generator (NAG uses -ieee=stop in DEBUG)
+    - python -u run_mhm_checks.py -l logs -e ../mhm_debug -s case_03 case_06 case_07 case_08 case_11
+  artifacts:
+    when: always
+    paths:
+    - check/logs/
+
+check-gcc73:
+  when: always
+  stage: test
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-gcc73
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.gcc73
+    - source CI-scripts/pre_check
+    - python -u run_mhm_checks.py -l logs -e ../mhm_debug ../mhm ../mhm_openmp_debug ../mhm_openmp -t 4
+  artifacts:
+    when: always
+    paths:
+    - check/logs/
+
+check-gcc73MPI:
+  when: always
+  stage: test
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-gcc73MPI
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.gcc73MPI
+    - source CI-scripts/pre_check
+    - python -u run_mhm_checks.py -l logs -e ../mhm_mpi_debug ../mhm_mpi -m 4
+  artifacts:
+    when: always
+    paths:
+    - check/logs/
+
+check-gcc83:
+  when: always
+  stage: test
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-gcc83
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.gcc83
+    - source CI-scripts/pre_check
+    - python -u run_mhm_checks.py -l logs -e ../mhm_debug ../mhm ../mhm_openmp_debug ../mhm_openmp -t 4
+  artifacts:
+    when: always
+    paths:
+    - check/logs/
+
+check-gcc83MPI:
+  when: always
+  stage: test
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-gcc83MPI
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.gcc83MPI
+    - source CI-scripts/pre_check
+    - python -u run_mhm_checks.py -l logs -e ../mhm_mpi_debug ../mhm_mpi -m 4
+  artifacts:
+    when: always
+    paths:
+    - check/logs/
+
+check-intel18:
+  when: always
+  stage: test
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-intel18
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.intel18
+    - source CI-scripts/pre_check
+    - python -u run_mhm_checks.py -l logs -e ../mhm_debug ../mhm ../mhm_openmp_debug ../mhm_openmp -t 4
+  artifacts:
+    when: always
+    paths:
+    - check/logs/
+
+check-intel18MPI:
+  when: always
+  stage: test
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-intel18MPI
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.intel18MPI
+    - source CI-scripts/pre_check
+    - python -u run_mhm_checks.py -l logs -e ../mhm_mpi_debug ../mhm_mpi -m 4
+  artifacts:
+    when: always
+    paths:
+    - check/logs/
+
+check-intel20:
+  when: always
+  stage: test
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-intel20
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.intel20
+    - source CI-scripts/pre_check
+    - python -u run_mhm_checks.py -l logs -e ../mhm_debug ../mhm ../mhm_openmp_debug ../mhm_openmp -t 4
+  artifacts:
+    when: always
+    paths:
+    - check/logs/
+
+check-intel20MPI:
+  when: always
+  stage: test
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: cmake-intel20MPI
+      artifacts: true
+  script:
+    - source moduleLoadScripts/eve.intel20MPI
+    - source CI-scripts/pre_check
+    - python -u run_mhm_checks.py -l logs -e ../mhm_mpi_debug ../mhm_mpi -m 4
+  artifacts:
+    when: always
+    paths:
+    - check/logs/
+
+coverage-gcc73:
+  when: always
+  stage: coverage
+  variables:
+    GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_PATH/$CI_COMMIT_REF_NAME/$CI_JOB_NAME
+  needs:
+    - job: check-gcc73
+  script:
+    # gcov is part of GCC
+    - source moduleLoadScripts/eve.gcc73
+    # we need lcov from the conda environment to create html sites
+    - module load Anaconda3
+    - source activate /global/apps/mhm_checks/mhm_env
+    # create build folder
+    - mkdir build && cd build
+    # run cmake with coverage support
+    - cmake -DCMAKE_WITH_COVERAGE:STRING=ON ..
+    # run all check-case for coverage calculation
+    - make mhm_coverage_CI
+    # copy the output to a top-level folder
+    - cd .. && mkdir coverage
+    - cp build/mhm_coverage_CI/* coverage -R
+  artifacts:
+    when: always
+    paths:
+    - coverage
+
+pages:
+  only:
+    - develop
+  stage: deploy
+  dependencies:
+    - documentation
+    - coverage-gcc73
+  script:
+    # create public dir (remove if already present)
+    - test -d public && rm -rf public
+    - mkdir -p public
+    # create the subdir
+    - mkdir public/stable/
+    - mkdir public/latest/
+    # copy the doxygen generated html page to the public site
+    - cp html_mas/* public/stable/ -R
+    - cp html_dev/* public/latest/ -R
+    # create an index.html that redirects to the master documentation (in master folder)
+    - cp doc/html_files/index.html public/
+    # create the coverage site
+    - mkdir -p public/coverage
+    - cp coverage/* public/coverage/ -R
+  artifacts:
+    name: "$CI_COMMIT_REF_NAME"
+    paths:
+      - public
+  when: always

CI-scripts/compile

+mkdir release
+cd release/
+cmake ..
+make -j 4
+cd ..
+cp release/mhm .
\ No newline at end of file

CI-scripts/compile_MPI

+mkdir mpi_release
+cd mpi_release/
+cmake -DCMAKE_WITH_MPI:STRING=ON ..
+make -j 4
+cd ..
+cp mpi_release/mhm ./mhm_mpi
\ No newline at end of file

CI-scripts/compile_MPI_debug

+mkdir mpi_debug
+cd mpi_debug/
+cmake -DCMAKE_WITH_MPI:STRING=ON -DCMAKE_BUILD_TYPE=Debug ..
+make -j 4
+cd ..
+cp mpi_debug/mhm ./mhm_mpi_debug
\ No newline at end of file

CI-scripts/compile_OpenMP

+mkdir openmp_release
+cd openmp_release/
+cmake -DCMAKE_WITH_OpenMP:STRING=ON ..
+make -j 4
+cd ..
+cp openmp_release/mhm ./mhm_openmp
\ No newline at end of file

CI-scripts/compile_OpenMP_debug

+mkdir openmp_debug
+cd openmp_debug/
+cmake -DCMAKE_WITH_OpenMP:STRING=ON -DCMAKE_BUILD_TYPE=Debug ..
+make -j 4
+cd ..
+cp openmp_debug/mhm ./mhm_openmp_debug
\ No newline at end of file

CI-scripts/compile_debug

+mkdir debug
+cd debug/
+cmake -DCMAKE_BUILD_TYPE=Debug ..
+make -j 4
+cd ..
+cp debug/mhm ./mhm_debug
\ No newline at end of file

CI-scripts/pre_check

+module load Anaconda3
+source activate /global/apps/mhm_checks/mhm_env
+cd check/
\ No newline at end of file

CI-scripts/run_cmake_coverage.sh

+#!/bin/bash
+for path in ../check/case_[0-9][0-9]; do
+    echo $path
+    out="$path/output_b1"
+    mkdir -p $out
+    ./mhm $path
+done

CMakeCacheFiles/example

 ##-D CMAKE_WITH_MPI:STRING=ON
 set(CMAKE_WITH_MPI OFF CACHE STRING "build the module with MPI, so it can be executed using mpirun")