diff --git a/DESCRIPTION b/DESCRIPTION index 4b0894ba2deb99d357853925b4dfe62dc2d8c3a5..e6f968eb632c1ffc740cab137fa642355ed4eb97 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: stressaddition Type: Package Title: Modelling Tri-Phasic Concentration-Response Relationships -Version: 3.0.2 -Date: 2020-09-09 +Version: 3.0.3 +Date: 2020-09-21 Authors@R: c(person("Sebastian", "Henz", role = c("aut", "cre"), @@ -22,7 +22,8 @@ Description: The stress addition approach is an alternative to the traditional concentration addition or effect addition models. It allows the modelling of tri-phasic concentration-response relationships either as single toxicant experiments, in combination with an environmental stressor or as mixtures of - two toxicants. See Liess et al. (2019) <doi:10.1038/s41598-019-51645-4>. + two toxicants. See Liess et al. (2019) <doi:10.1038/s41598-019-51645-4> + and Liess et al. (2020) <doi:10.1186/s12302-020-00394-7>. License: GPL-3 Copyright: file inst/COPYRIGHTS URL: https://git.ufz.de/oekotox/stressaddition diff --git a/NEWS.md b/NEWS.md index 3e75fb8de986ea801c250a63afdd411207a78571..beb7e46ddad9cb1b8a5041e60d198e8341a4b35c 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,7 @@ +# stressaddition 3.0.3 + +* Added references to the journal article about the Multi-Tox model which was recently published. + # stressaddition 3.0.2 * Fixed a bug where the plotting functions printed `NULL` to the console. diff --git a/R/data.R b/R/data.R index eb8c1d8bd4dd1f2dbc27b45a6fa0bc299362c0f9..0a4c6cbb2a85a3ead544bfdf40b1cbc32293fa61 100644 --- a/R/data.R +++ b/R/data.R @@ -41,6 +41,7 @@ #' of Pesticide Mixtures on Daphnia magna. Environ. Sci. Technol. 53, #' 12586–12593.} #' -#' Liess, M., Henz, S., Shahid, N., 2020. Modelling the synergistic effects -#' of toxicant mixtures. Manuscript submitted for publication. +#' \href{https://doi.org/10.1186/s12302-020-00394-7}{Liess, M., Henz, S. & +#' Shahid, N. Modeling the synergistic effects of +#' toxicant mixtures. Environ Sci Eur 32, 119 (2020).} "multiple_stress" diff --git a/R/multi_tox.R b/R/multi_tox.R index 97ae971924e26d36c6e8ca07f34c87d46583c292..a7d0a94fa6c01e63114865797c14ef7b5b1d8502 100644 --- a/R/multi_tox.R +++ b/R/multi_tox.R @@ -86,8 +86,9 @@ #' mt[1:3] # The concentrations and survival of the 4 mixtures. #' #' -#' @references Liess, M., Henz, S., Shahid, N., 2020. Modelling the synergistic -#' effects of toxicant mixtures. Manuscript submitted for publication. +#' @references \href{https://doi.org/10.1186/s12302-020-00394-7}{Liess, M., +#' Henz, S. & Shahid, N. Modeling the synergistic effects of +#' toxicant mixtures. Environ Sci Eur 32, 119 (2020).} #' #' @export multi_tox <- function(model_a, diff --git a/R/stressaddition-package.R b/R/stressaddition-package.R index c761fcb32f8da660b4885c9c34d1778a9a0114a7..2ac20d4ba949000425572e82b31c7c840beb1f74 100644 --- a/R/stressaddition-package.R +++ b/R/stressaddition-package.R @@ -39,8 +39,9 @@ #' Henz, S. & Knillmann, S. Predicting low-concentration effects of #' pesticides. Sci Rep 9, 15248 (2019).} #' -#' Liess, M., Henz, S., Shahid, N., 2020. Modelling the synergistic effects of -#' toxicant mixtures. Manuscript submitted for publication. +#' \href{https://doi.org/10.1186/s12302-020-00394-7}{Liess, M., Henz, S. & +#' Shahid, N. Modeling the synergistic effects of +#' toxicant mixtures. Environ Sci Eur 32, 119 (2020).} #' #' @import stats #' @import graphics diff --git a/README.md b/README.md index 05c4136f52068caaa2e87a682cb7955a60de490c..0f368387c6349463f7760562dee3b276e2c8f360 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ This R package makes it possible to model tri-phasic concentration-response rela `ecxsys()` implements **EC<sub>x-SyS</sub>**, the tri-phasic concentration-response model introduced in [Liess, M., Henz, S. & Knillmann, S. Predicting low-concentration effects of pesticides. Sci Rep 9, 15248 (2019)](https://doi.org/10.1038/s41598-019-51645-4). It is applicable to modelling ecotoxicological experiments with and without environmental stress where the response contains a hormesis effect. -`multi_tox()` implements **Multi-TOX**, a model for binary mixtures of toxicants where each toxicant exhibits a tri-phasic concentration-response relationship. See *Liess, M., Henz, S., Shahid, N. (2020), Modelling the synergistic effects of toxicant mixtures. Manuscript submitted for publication*. +`multi_tox()` implements **Multi-TOX**, a model for binary mixtures of toxicants where each toxicant exhibits a tri-phasic concentration-response relationship. See [Liess, M., Henz, S. & Shahid, N. Modeling the synergistic effects of toxicant mixtures. Environ Sci Eur 32, 119 (2020)](https://doi.org/10.1186/s12302-020-00394-7). The EC<sub>x-SyS</sub> and Multi-TOX models are also available as part of the [Indicate app](http://www.systemecology.eu/indicate) which offers an easy to use graphical user interface. diff --git a/man/multi_tox.Rd b/man/multi_tox.Rd index 7abbb9fd1f38b4ab7559e596f676fd4bc1cae8aa..47994cc34a89744402eaa5ef9193e1d7803ee65c 100644 --- a/man/multi_tox.Rd +++ b/man/multi_tox.Rd @@ -89,6 +89,7 @@ mt[1:3] # The concentrations and survival of the 4 mixtures. } \references{ -Liess, M., Henz, S., Shahid, N., 2020. Modelling the synergistic - effects of toxicant mixtures. Manuscript submitted for publication. +\href{https://doi.org/10.1186/s12302-020-00394-7}{Liess, M., + Henz, S. & Shahid, N. Modeling the synergistic effects of + toxicant mixtures. Environ Sci Eur 32, 119 (2020).} } diff --git a/man/multiple_stress.Rd b/man/multiple_stress.Rd index 8667622d5138803f6d0c1c33163ac7dad14ea3ea..1042d71fc23668247b21d1c18c3825cc9a587fd7 100644 --- a/man/multiple_stress.Rd +++ b/man/multiple_stress.Rd @@ -19,8 +19,9 @@ A data frame with 58 rows and 4 variables: of Pesticide Mixtures on Daphnia magna. Environ. Sci. Technol. 53, 12586–12593.} - Liess, M., Henz, S., Shahid, N., 2020. Modelling the synergistic effects - of toxicant mixtures. Manuscript submitted for publication. + \href{https://doi.org/10.1186/s12302-020-00394-7}{Liess, M., Henz, S. & + Shahid, N. Modeling the synergistic effects of + toxicant mixtures. Environ Sci Eur 32, 119 (2020).} } \usage{ multiple_stress diff --git a/man/stressaddition-package.Rd b/man/stressaddition-package.Rd index 223841f7f118de2b6065b124306e7a21602de48c..224c8fcac0f15f93ecee4bb53715aabbe692885b 100644 --- a/man/stressaddition-package.Rd +++ b/man/stressaddition-package.Rd @@ -10,7 +10,8 @@ The stress addition approach is an alternative to the traditional concentration addition or effect addition models. It allows the modelling of tri-phasic concentration-response relationships either as single toxicant experiments, in combination with an environmental stressor or as mixtures of - two toxicants. See Liess et al. (2019) <doi:10.1038/s41598-019-51645-4>. + two toxicants. See Liess et al. (2019) <doi:10.1038/s41598-019-51645-4> + and Liess et al. (2020) <doi:10.1186/s12302-020-00394-7>. } \details{ This R package contains the definitions of the @@ -26,8 +27,9 @@ This R package contains the definitions of the Henz, S. & Knillmann, S. Predicting low-concentration effects of pesticides. Sci Rep 9, 15248 (2019).} - Liess, M., Henz, S., Shahid, N., 2020. Modelling the synergistic effects of - toxicant mixtures. Manuscript submitted for publication. + \href{https://doi.org/10.1186/s12302-020-00394-7}{Liess, M., Henz, S. & + Shahid, N. Modeling the synergistic effects of + toxicant mixtures. Environ Sci Eur 32, 119 (2020).} } \seealso{ Useful links: