Rename some things

  • Rename effect_tox_observed_averaged and effect_tox_env_observed_averaged. Maybe "smoothed" instead of "averaged"?
  • Rename all variables calles sys_stress_* because the "stress" is redundant and thus confusing.
  • Attach "before_fit" to the names output$sys_stress_tox and output$sys_stress_tox_env. Also include a fitted version in output.
  • In ec() rename target_effect to response_level making it similar to drc::ED().
  • The names of the objects in the ecxsys output including the column names in output$curves are messy. Make them easier to understand and less similar to each other, if possible.
  • I may want to be able to plot other stresses, not only sys. Therefore I should rename the function plot_system_stress to plot_stress.
  • "simple" -> "LL5"
  • effect_tox_simple -> effect_tox_LL5, effect_tox_mod_simple -> effect_tox_LL5_mod, and same with env.
  • Updated documentation.
  • Updated tests.
Edited by Sebastian Henz