diff --git a/test/flagger/__init__.py b/test/flagger/__init__.py deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/testsfuzzy/__init__.py b/tests/__init__.py similarity index 100% rename from testsfuzzy/__init__.py rename to tests/__init__.py diff --git a/test/common.py b/tests/common.py similarity index 100% rename from test/common.py rename to tests/common.py diff --git a/test/core/__init__.py b/tests/core/__init__.py similarity index 100% rename from test/core/__init__.py rename to tests/core/__init__.py diff --git a/test/core/test_core.py b/tests/core/test_core.py similarity index 97% rename from test/core/test_core.py rename to tests/core/test_core.py index 51b99f5c441fc1bde50d843917a30c63a92a38e1..cddc2fd59d700157475efc9be93c84d5fffd6e5c 100644 --- a/test/core/test_core.py +++ b/tests/core/test_core.py @@ -7,12 +7,12 @@ import numpy as np import pandas as pd from saqc.common import * -from saqc.flagger import Flagger, initFlagsLike +from saqc.flagger import initFlagsLike from saqc.funcs import flagRange from saqc.lib import plotting as splot from saqc import SaQC, register -from test.common import initData, flagAll +from tests.common import initData, flagAll # no logging output needed here # -> can this be configured on the test runner level? diff --git a/test/core/test_creation.py b/tests/core/test_creation.py similarity index 100% rename from test/core/test_creation.py rename to tests/core/test_creation.py diff --git a/test/core/test_reader.py b/tests/core/test_reader.py similarity index 98% rename from test/core/test_reader.py rename to tests/core/test_reader.py index 9ab7d2a51a362cbf2eba21daaf642ddb91fcb424..e2d80042bfb5a10400306f937300106dcd8b759e 100644 --- a/test/core/test_reader.py +++ b/tests/core/test_reader.py @@ -11,7 +11,7 @@ from saqc.core.config import Fields as F from saqc.core.core import SaQC from saqc.core.register import FUNC_MAP, register -from test.common import initData, writeIO +from tests.common import initData, writeIO @pytest.fixture diff --git a/test/fixtures.py b/tests/fixtures.py similarity index 100% rename from test/fixtures.py rename to tests/fixtures.py diff --git a/test/__init__.py b/tests/flagger/__init__.py similarity index 100% rename from test/__init__.py rename to tests/flagger/__init__.py diff --git a/test/flagger/test_flagger.py b/tests/flagger/test_flagger.py similarity index 99% rename from test/flagger/test_flagger.py rename to tests/flagger/test_flagger.py index a304409fbe104cd2922ef4610b2f9f92df9e181c..1af9f47106458bcdfe1c2016d43c15f22a630901 100644 --- a/test/flagger/test_flagger.py +++ b/tests/flagger/test_flagger.py @@ -7,7 +7,7 @@ from pandas.api.types import is_bool_dtype import dios -from test.common import TESTFLAGGER, initData +from tests.common import TESTFLAGGER, initData pytestmark = pytest.mark.skip('old flagger tests - rewrite needed') diff --git a/test/flagger/test_flags.py b/tests/flagger/test_flags.py similarity index 99% rename from test/flagger/test_flags.py rename to tests/flagger/test_flags.py index c04177101559505c76f95bbddf6cf7c0d62bde89..6520220482f0cb1b21988fc47188dc293c85ef73 100644 --- a/test/flagger/test_flags.py +++ b/tests/flagger/test_flags.py @@ -7,7 +7,7 @@ import pandas as pd from saqc.common import * from saqc.flagger.flags import Flags -from test.flagger.test_history import ( +from tests.flagger.test_history import ( History, is_equal as hist_equal, ) diff --git a/test/flagger/test_history.py b/tests/flagger/test_history.py similarity index 100% rename from test/flagger/test_history.py rename to tests/flagger/test_history.py diff --git a/test/funcs/__init__.py b/tests/funcs/__init__.py similarity index 100% rename from test/funcs/__init__.py rename to tests/funcs/__init__.py diff --git a/test/funcs/test_constants_detection.py b/tests/funcs/test_constants_detection.py similarity index 96% rename from test/funcs/test_constants_detection.py rename to tests/funcs/test_constants_detection.py index 30a16db1091d53d3e4f92beaab7171d07874627a..1ae7be1986a58920738ba809d1ae23506d06889b 100644 --- a/test/funcs/test_constants_detection.py +++ b/tests/funcs/test_constants_detection.py @@ -8,7 +8,7 @@ from saqc.common import * from saqc.funcs.constants import flagConstants, flagByVariance from saqc.flagger import initFlagsLike -from test.common import initData +from tests.common import initData @pytest.fixture diff --git a/test/funcs/test_functions.py b/tests/funcs/test_functions.py similarity index 98% rename from test/funcs/test_functions.py rename to tests/funcs/test_functions.py index a205e517d9ef0e36e9921787ca47deef7afb07e2..bbaa20ad5fa8da76ea06e78c8c82c801a31baea5 100644 --- a/test/funcs/test_functions.py +++ b/tests/funcs/test_functions.py @@ -1,13 +1,10 @@ #! /usr/bin/env python # -*- coding: utf-8 -*- -import pytest -import pandas as pd -import numpy as np import dios from saqc.common import * -from saqc.flagger import Flagger, initFlagsLike +from saqc.flagger import initFlagsLike from saqc.funcs.drift import flagDriftFromNorm, flagDriftFromReference, flagDriftFromScaledNorm from saqc.funcs.outliers import flagCrossStatistic, flagRange from saqc.funcs.flagtools import flagManual, forceFlags, clearFlags @@ -15,8 +12,8 @@ from saqc.funcs.tools import drop, copy, mask from saqc.funcs.resampling import reindexFlags from saqc.funcs.breaks import flagIsolated -from test.fixtures import * -from test.common import initData +from tests.fixtures import * +from tests.common import initData @pytest.fixture diff --git a/test/funcs/test_generic_api_functions.py b/tests/funcs/test_generic_api_functions.py similarity index 95% rename from test/funcs/test_generic_api_functions.py rename to tests/funcs/test_generic_api_functions.py index 76c9f0d5352f8a9584b9beed1ecabfaed9f4fbe8..d581c4344d7580fa9c0bec3ba5fb36a6efe6147e 100644 --- a/test/funcs/test_generic_api_functions.py +++ b/tests/funcs/test_generic_api_functions.py @@ -1,9 +1,7 @@ #! /usr/bin/env python # -*- coding: utf-8 -*- -import ast import pytest -import numpy as np import pandas as pd from saqc.common import * @@ -11,7 +9,7 @@ from saqc.core.register import register from saqc.funcs.tools import mask from saqc import SaQC -from test.common import initData, flagAll +from tests.common import initData, flagAll register(masking='field')(flagAll) diff --git a/test/funcs/test_generic_config_functions.py b/tests/funcs/test_generic_config_functions.py similarity index 99% rename from test/funcs/test_generic_config_functions.py rename to tests/funcs/test_generic_config_functions.py index 81e91d6430e019231537413862b8cc8305c105db..6e84e6a994b41c0ba2a372802884cb4fccd8ff70 100644 --- a/test/funcs/test_generic_config_functions.py +++ b/tests/funcs/test_generic_config_functions.py @@ -15,7 +15,7 @@ from saqc.core.register import register from saqc.funcs.generic import _execGeneric from saqc import SaQC -from test.common import TESTNODATA, initData, writeIO +from tests.common import TESTNODATA, initData, writeIO @pytest.fixture diff --git a/test/funcs/test_harm_funcs.py b/tests/funcs/test_harm_funcs.py similarity index 99% rename from test/funcs/test_harm_funcs.py rename to tests/funcs/test_harm_funcs.py index 187a4b7c4f1110c5ea1be2679ef97d6b8f519d20..4f12a41d2a6629c685abe89ff33ce49d884f2b62 100644 --- a/test/funcs/test_harm_funcs.py +++ b/tests/funcs/test_harm_funcs.py @@ -8,7 +8,7 @@ import numpy as np import pandas as pd import dios -from test.common import TESTFLAGGER +from tests.common import TESTFLAGGER from saqc.funcs.resampling import ( linear, diff --git a/test/funcs/test_modelling.py b/tests/funcs/test_modelling.py similarity index 96% rename from test/funcs/test_modelling.py rename to tests/funcs/test_modelling.py index 748a06fa33ffdec0889edd28abf9ed86d8c7c306..6d99d5786e6a2d3e420aa793a7e0c2baf1dde2f8 100644 --- a/test/funcs/test_modelling.py +++ b/tests/funcs/test_modelling.py @@ -4,16 +4,13 @@ # see test/functs/fixtures.py for global fixtures "course_..." -import pytest -import numpy as np -import pandas as pd import dios from saqc.funcs.tools import mask from saqc.funcs.residues import calculatePolynomialResidues, calculateRollingResidues -from test.fixtures import * -from test.common import TESTFLAGGER +from tests.fixtures import * +from tests.common import TESTFLAGGER TF = TESTFLAGGER[:1] diff --git a/test/funcs/test_pattern_rec.py b/tests/funcs/test_pattern_rec.py similarity index 94% rename from test/funcs/test_pattern_rec.py rename to tests/funcs/test_pattern_rec.py index 6f437edc2a240e22eba4f7d10b4284a29c92dc7a..3ca69d7072ec6414a0503144d586462cfffb6cb4 100644 --- a/test/funcs/test_pattern_rec.py +++ b/tests/funcs/test_pattern_rec.py @@ -6,9 +6,9 @@ import pandas as pd import dios from saqc.common import * -from saqc.flagger import Flagger, initFlagsLike +from saqc.flagger import initFlagsLike from saqc.funcs.pattern import * -from test.common import initData +from tests.common import initData @pytest.fixture diff --git a/test/funcs/test_proc_functions.py b/tests/funcs/test_proc_functions.py similarity index 97% rename from test/funcs/test_proc_functions.py rename to tests/funcs/test_proc_functions.py index 7f07e1d2efea1520576457d699dbdb160ef4969e..31337badcfddcdd11c93c9d397c41577f213d4d0 100644 --- a/test/funcs/test_proc_functions.py +++ b/tests/funcs/test_proc_functions.py @@ -4,9 +4,6 @@ # see test/functs/fixtures.py for global fixtures "course_..." -import pytest -import numpy as np -import pandas as pd import dios from saqc.common import * @@ -16,8 +13,8 @@ from saqc.funcs.interpolation import interpolateByRolling, interpolateInvalid, i from saqc.funcs.resampling import resample from saqc.lib.ts_operators import linearInterpolation, polynomialInterpolation -from test.fixtures import * -from test.common import TESTFLAGGER +from tests.fixtures import * +from tests.common import TESTFLAGGER @pytest.mark.parametrize("flagger", TESTFLAGGER) diff --git a/test/funcs/test_spikes_detection.py b/tests/funcs/test_spikes_detection.py similarity index 96% rename from test/funcs/test_spikes_detection.py rename to tests/funcs/test_spikes_detection.py index 13526b62d3a2bbad4bc74e71de71be8f3cf50dcc..578dd9c446821adf6f2ef25ed9b1153f56d21d16 100644 --- a/test/funcs/test_spikes_detection.py +++ b/tests/funcs/test_spikes_detection.py @@ -2,11 +2,8 @@ # -*- coding: utf-8 -*- # see test/functs/fixtures.py for global fixtures "course_..." -import pytest -import numpy as np -import pandas as pd import dios -from test.fixtures import * +from tests.fixtures import * from saqc.funcs.outliers import ( flagMAD, @@ -16,7 +13,7 @@ from saqc.funcs.outliers import ( flagByGrubbs, ) from saqc.common import * -from saqc.flagger import Flagger, initFlagsLike +from saqc.flagger import initFlagsLike @pytest.fixture(scope="module") diff --git a/tests/fuzzy/__init__.py b/tests/fuzzy/__init__.py new file mode 100644 index 0000000000000000000000000000000000000000..4265cc3e6c16c09774190fa55d609cd9fe0808e4 --- /dev/null +++ b/tests/fuzzy/__init__.py @@ -0,0 +1 @@ +#!/usr/bin/env python diff --git a/testsfuzzy/init.py b/tests/fuzzy/init.py similarity index 100% rename from testsfuzzy/init.py rename to tests/fuzzy/init.py diff --git a/testsfuzzy/test_functions.py b/tests/fuzzy/test_functions.py similarity index 97% rename from testsfuzzy/test_functions.py rename to tests/fuzzy/test_functions.py index fc3caa00ed468731071578df148f8ed656290e0e..09d1f8484c28e8a47d82d747921dcdb764b69b7a 100644 --- a/testsfuzzy/test_functions.py +++ b/tests/fuzzy/test_functions.py @@ -6,7 +6,7 @@ from hypothesis import given, settings from hypothesis.strategies import data, from_type from saqc.core.register import FUNC_MAP -from testsfuzzy.init import MAX_EXAMPLES, functionKwargs +from tests.fuzzy.init import MAX_EXAMPLES, functionKwargs @settings(max_examples=MAX_EXAMPLES, deadline=None) diff --git a/testsfuzzy/test_masking.py b/tests/fuzzy/test_masking.py similarity index 96% rename from testsfuzzy/test_masking.py rename to tests/fuzzy/test_masking.py index b1eb5861e40581b4365eede2cadeb654d419ec8f..9d45520eb90d9dc4a4deb2f95045debd71d7c838 100644 --- a/testsfuzzy/test_masking.py +++ b/tests/fuzzy/test_masking.py @@ -6,17 +6,12 @@ import logging import pandas as pd from hypothesis import given, settings -from hypothesis.strategies import ( - sampled_from, - composite, - sampled_from, -) from saqc.common import * -from saqc.flagger import Flagger, initFlagsLike +from saqc.flagger import Flagger from saqc.core.register import _maskData, _unmaskData -from testsfuzzy.init import dataFieldFlagger, MAX_EXAMPLES +from tests.fuzzy.init import dataFieldFlagger, MAX_EXAMPLES logging.disable(logging.CRITICAL) diff --git a/tests/lib/__init__.py b/tests/lib/__init__.py new file mode 100644 index 0000000000000000000000000000000000000000..4265cc3e6c16c09774190fa55d609cd9fe0808e4 --- /dev/null +++ b/tests/lib/__init__.py @@ -0,0 +1 @@ +#!/usr/bin/env python diff --git a/test/lib/test_rolling.py b/tests/lib/test_rolling.py similarity index 100% rename from test/lib/test_rolling.py rename to tests/lib/test_rolling.py