#! /usr/bin/env python # SPDX-FileCopyrightText: 2021 Helmholtz-Zentrum für Umweltforschung GmbH - UFZ # # SPDX-License-Identifier: GPL-3.0-or-later # -*- coding: utf-8 -*- import numpy as np import pandas as pd # see test/functs/fixtures.py for global fixtures "course_..." import pytest import saqc from saqc import UNFLAGGED, SaQC from saqc.core import DictOfSeries, initFlagsLike from saqc.lib.ts_operators import linearInterpolation, polynomialInterpolation from tests.fixtures import char_dict, course_3, course_5 # noqa, todo: fix fixtures def test_rollingInterpolateMissing(course_5): data, characteristics = course_5(periods=10, nan_slice=[5, 6]) field = data.columns[0] data = DictOfSeries(data) flags = initFlagsLike(data) qc = SaQC(data, flags).interpolateByRolling( field, 3, func=np.median, center=True, min_periods=0, interpol_flag=UNFLAGGED, ) assert qc.data[field][characteristics["missing"]].notna().all() qc = SaQC(data, flags).interpolateByRolling( field, 3, func=np.nanmean, center=False, min_periods=3, interpol_flag=UNFLAGGED, ) assert qc.data[field][characteristics["missing"]].isna().all() def test_interpolate(course_5): data, characteristics = course_5(periods=10, nan_slice=[5]) field = data.columns[0] data = DictOfSeries(data) flags = initFlagsLike(data) qc = SaQC(data, flags) qc_lin = qc.interpolate(field, method="linear") qc_poly = qc.interpolate(field, method="polynomial") assert qc_lin.data[field][characteristics["missing"]].notna().all() assert qc_poly.data[field][characteristics["missing"]].notna().all() data, characteristics = course_5(periods=10, nan_slice=[5, 6, 7]) qc = SaQC(data, flags) qc_lin_1 = qc.interpolate(field, method="linear", limit=2) qc_lin_2 = qc.interpolate(field, method="linear", limit=3) qc_lin_3 = qc.interpolate(field, method="linear", limit=4) assert qc_lin_1.data[field][characteristics["missing"]].isna().all() assert qc_lin_2.data[field][characteristics["missing"]].isna().all() assert qc_lin_3.data[field][characteristics["missing"]].notna().all() def test_transform(course_5): data, characteristics = course_5(periods=10, nan_slice=[5, 6]) field = data.columns[0] data = DictOfSeries(data) flags = initFlagsLike(data) qc = SaQC(data, flags) result = qc.transform(field, func=linearInterpolation) assert result.data[field][characteristics["missing"]].isna().all() result = qc.transform(field, func=lambda x: linearInterpolation(x, inter_limit=3)) assert result.data[field][characteristics["missing"]].notna().all() result = qc.transform( field, func=lambda x: polynomialInterpolation(x, inter_limit=3, inter_order=3), ) assert result.data[field][characteristics["missing"]].notna().all() def test_resample(course_5): data, _ = course_5(freq="1min", periods=30, nan_slice=[1, 11, 12, 22, 24, 26]) field = data.columns[0] data = DictOfSeries(data) flags = initFlagsLike(data) qc = SaQC(data, flags).resample( field, "10min", np.mean, maxna=2, maxna_group=1, ) assert ~np.isnan(qc.data[field].iloc[0]) assert np.isnan(qc.data[field].iloc[1]) assert np.isnan(qc.data[field].iloc[2]) def test_interpolateGrid(course_5, course_3): data, _ = course_5() data_grid, _ = course_3() data["grid"] = data_grid["data"] flags = initFlagsLike(data) SaQC(data, flags).align("data", "1h", "time", grid_field="grid", limit=10) @pytest.mark.slow def test_offsetCorrecture(): data = pd.Series(0, index=pd.date_range("2000", freq="1d", periods=100), name="dat") data.iloc[30:40] = -100 data.iloc[70:80] = 100 flags = initFlagsLike(data) qc = SaQC(data, flags).correctOffset("dat", 40, 20, "3d", 1) assert (qc.data["dat"] == 0).all() # GL-333 def test_resampleSingleEmptySeries(): qc = saqc.SaQC(pd.DataFrame(1, columns=["a"], index=pd.DatetimeIndex([]))) qc.resample("a", freq="1d") @pytest.mark.parametrize( "data", [ pd.Series( [ np.random.normal(loc=1 + k * 0.1, scale=3 * (1 - (k * 0.001))) for k in range(100) ], index=pd.date_range("2000", freq="1D", periods=100), name="data", ) ], ) def test_assignZScore(data): qc = saqc.SaQC(data) qc = qc.assignZScore("data", window="20D") mean_res = qc.data["data"].mean() std_res = qc.data["data"].std() assert -0.1 < mean_res < 0.1 assert 0.9 < std_res < 1.1