dockering...

Dockerfile

@@ -4,10 +4,12 @@ RUN apt-get update && apt-get install -y --no-install-recommends git gcc python3
 
 RUN git clone --recursive https://git.ufz.de/rdm/pipelines/crns /pipeline
 
+WORKDIR pipeline
+
 ENV PYTHONPATH=saqc/:pipetools/:$PYTHONPATH
 
 RUN pip install --no-cache-dir --upgrade pip
-RUN pip install --no-cache-dir -r /pipeline/saqc/requirements.txt
+RUN pip install --no-cache-dir -r saqc/requirements.txt
 RUN pip install --no-cache-dir snakemake
 
-CMD snakemake --snakefile /pipeline/Snakefile -j2 --forceall --printshellcmds --keep-going --restart-times 3
+CMD snakemake -j2 --forceall --printshellcmds --keep-going --restart-times 3