Commit 2dc259dd authored by David Schäfer's avatar David Schäfer
Browse files

dockering...

parent 99883bfe
......@@ -4,10 +4,12 @@ RUN apt-get update && apt-get install -y --no-install-recommends git gcc python3
RUN git clone --recursive https://git.ufz.de/rdm/pipelines/crns /pipeline
WORKDIR pipeline
ENV PYTHONPATH=saqc/:pipetools/:$PYTHONPATH
RUN pip install --no-cache-dir --upgrade pip
RUN pip install --no-cache-dir -r /pipeline/saqc/requirements.txt
RUN pip install --no-cache-dir -r saqc/requirements.txt
RUN pip install --no-cache-dir snakemake
CMD snakemake --snakefile /pipeline/Snakefile -j2 --forceall --printshellcmds --keep-going --restart-times 3
CMD snakemake -j2 --forceall --printshellcmds --keep-going --restart-times 3
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