Commit a7e8c513 authored by David Schäfer's avatar David Schäfer
Browse files

remove now unnecessary patch

parent 9ce886cd
......@@ -4,9 +4,6 @@ RUN apt-get update && apt-get install -y --no-install-recommends git gcc python3
RUN git clone --recursive /pipeline
# apply a pipeline specific path to *not* write flag metadata
RUN cd /pipeline/pipetools && git apply /pipeline/metadata.patch
WORKDIR pipeline
diff --git a/ b/
index c48e472..c2bfad7 100644
--- a/
+++ b/
@@ -60,6 +60,9 @@ def main(infile, basefile, project, logger, level, dry_run, force_run, user, pas
data_out, flags_out = maybeSplit(df.loc[cols], level)
+ # we don't write 'real' metadata here
+ flags_out["quality_comment"] = json.dumps({"comment":"", "test": ""})
data_count_org = data_out.size
flags_count_org = flags_out.size
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