Release candidate

Sebastian Henzrequested to merge
release_candidate into master

description

Last changes before manuscript submission.

  • Update authors.
  • Renamed all instances of "effect" to "survival".
  • Renamed all instances of "ec" to "lc".
  • Renamed predict_mixture(), which was a temporary development name, to multi_tox().
  • The argument proportion_ca in the mixture model multi_tox() was renamed and its value reversed. It is now called sa_contribution and specifies the proportion of stress addition in the calculation of toxicant stress. To convert your code from the old version use this equation: sa_contribution = 1 - proportion_ca.
  • Renamed stress_tox_sam to stress_tox_sa in the output of multi_tox().
  • Fixed a bug where plot_stress() with argument which = NULL would result in an error. Now it correctly draws the axes without data.
  • Fixed some errors in the documentation and improved the examples.
  • Export function log10_ticks() for calculating tick mark labels and positions on a base 10 logarithmic axis.
  • Add example data set multiple_stress for use with multi_tox().
  • Various minor changes to prepare for CRAN submission.

system details

  • R Version: 3.6.3
  • RStudio Version: 1.3.958
  • OS Version: Windows 10 x64

checklist

  • This merge introduces new features.
    • new features are documented
    • new features have tests
  • update documentation including examples (if necessary)
  • update and polish NEWS.md
  • update version in DESCRIPTION
  • update date in DESCRIPTION
  • no remaining TODO, FIXME, or debug prints anywhere in the source files
  • devtools::document() and commit the updated .Rd files
  • devtools::check() without errors or warnings
Edited by Sebastian Henz

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