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rdm-software
SaQC
Commits
e2fb79ab
Commit
e2fb79ab
authored
5 years ago
by
David Schäfer
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removed some boilerplate
parent
221b1935
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1 changed file
core.py
+14
-16
14 additions, 16 deletions
core.py
with
14 additions
and
16 deletions
core.py
+
14
−
16
View file @
e2fb79ab
...
@@ -91,39 +91,37 @@ def runner(meta, flagger, data, flags=None, nodata=np.nan):
...
@@ -91,39 +91,37 @@ def runner(meta, flagger, data, flags=None, nodata=np.nan):
fchunk
=
flags
.
loc
[
start_date
:
end_date
].
copy
()
fchunk
=
flags
.
loc
[
start_date
:
end_date
].
copy
()
try
:
try
:
dchunk
,
fchunk
=
flagDispatch
(
func_name
,
dchunk
,
f
fchunk
=
flagDispatch
(
func_name
,
dchunk
,
fchunk
,
varname
,
dchunk
,
fchunk
,
varname
,
flagger
,
nodata
=
nodata
,
flagger
,
nodata
=
nodata
,
**
flag_params
)
**
flag_params
)
except
NameError
:
except
NameError
:
raise
NameError
(
raise
NameError
(
f
"
function name
{
func_name
}
is not definied (variable
'
{
varname
}
,
'
line:
{
idx
+
1
}
)
"
)
f
"
function name
{
func_name
}
is not definied (variable
'
{
varname
}
,
'
line:
{
idx
+
1
}
)
"
)
old
=
flagger
.
getFlags
(
f
lags
.
loc
[
start_date
:
end_date
,
varname
])
old
=
flagger
.
getFlags
(
f
chunk
[
varname
])
new
=
flagger
.
getFlags
(
fchunk
[
varname
])
new
=
flagger
.
getFlags
(
f
fchunk
[
varname
])
mask
=
old
!=
new
mask
=
old
!=
new
# flag a timespan after the condition is met
# flag a timespan after the condition is met
if
Params
.
FLAGPERIOD
in
flag_params
:
if
Params
.
FLAGPERIOD
in
flag_params
:
fchunk
[
varname
]
=
flagPeriod
(
flagger
,
fchunk
[
varname
],
mask
,
**
flag_params
)
f
fchunk
[
varname
]
=
flagPeriod
(
flagger
,
f
fchunk
[
varname
],
mask
,
**
flag_params
)
# flag a certain amount of values after condition is met
# flag a certain amount of values after condition is met
if
Params
.
FLAGVALUES
in
flag_params
:
if
Params
.
FLAGVALUES
in
flag_params
:
fchunk
[
varname
]
=
flagNext
(
flagger
,
fchunk
[
varname
],
mask
,
**
flag_params
)
f
fchunk
[
varname
]
=
flagNext
(
flagger
,
f
fchunk
[
varname
],
mask
,
**
flag_params
)
if
Params
.
FLAGPERIOD
in
flag_params
or
Params
.
FLAGVALUES
in
flag_params
:
if
Params
.
FLAGPERIOD
in
flag_params
or
Params
.
FLAGVALUES
in
flag_params
:
# hack as assignment above don't preserve categorical type
# hack as assignment
s
above don't preserve categorical type
fchunk
=
fchunk
.
astype
({
f
fchunk
=
f
fchunk
.
astype
({
c
:
flagger
.
flags
for
c
in
fchunk
.
columns
if
flagger
.
flag_fields
[
0
]
in
c
})
c
:
flagger
.
flags
for
c
in
f
fchunk
.
columns
if
flagger
.
flag_fields
[
0
]
in
c
})
if
flag_params
.
get
(
Params
.
PLOT
,
False
):
if
flag_params
.
get
(
Params
.
PLOT
,
False
):
plotvars
.
append
(
varname
)
plotvars
.
append
(
varname
)
new
=
flagger
.
getFlags
(
fchunk
[
varname
])
plot
(
dchunk
,
ffchunk
,
mask
,
varname
,
flagger
,
title
=
flag_test
)
mask
=
old
!=
new
plot
(
dchunk
,
fchunk
,
mask
,
varname
,
flagger
,
title
=
flag_test
)
data
.
loc
[
start_date
:
end_date
]
=
dchunk
data
.
loc
[
start_date
:
end_date
]
=
dchunk
flags
[
start_date
:
end_date
]
=
fchunk
.
squeeze
()
flags
[
start_date
:
end_date
]
=
f
fchunk
.
squeeze
()
flagger
.
nextTest
()
flagger
.
nextTest
()
...
@@ -223,7 +221,7 @@ def plot(data, flags, flagmask, varname, flagger, interactive_backend=True, titl
...
@@ -223,7 +221,7 @@ def plot(data, flags, flagmask, varname, flagger, interactive_backend=True, titl
plt
.
plot
([],
[],
'
:
'
,
color
=
'
silver
'
,
label
=
"
missing data
"
)
plt
.
plot
([],
[],
'
:
'
,
color
=
'
silver
'
,
label
=
"
missing data
"
)
plt
.
legend
()
plt
.
legend
()
plt
.
show
()
plt
.
show
()
def
prepareMeta
(
meta
,
data
):
def
prepareMeta
(
meta
,
data
):
# NOTE: an option needed to only pass tests within an file and deduce
# NOTE: an option needed to only pass tests within an file and deduce
...
...
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