Support JSON input
For the Galaxy tool wrapper, it would simplify the call a bit if JSON would be supported.
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At the moment the JSON generated by Galaxy looks like this (I guess some postprocessing will be necessary anyway):
{"methods_repeat": [{"module_cond": {"method_cond": {"field": "SM2", "min": 10.0, "max": 60.0, "flag": 255.0, "method_select": "flagRange"}, "module_select": "outliers"}}, {"module_cond": {"method_cond": {"field": "SM2", "window_cond": {"window_select": "none"}, "z": 3.5, "min_residuals": null, "min_periods": null, "center": false, "flag": 255.0, "method_select": "flagMAD"}, "module_select": "outliers"}}, {"module_cond": {"method_cond": {"field": "SM2", "path": "test", "max_gap": null, "history_cond": {"history": "valid", "history_select": "valid"}, "phaseplot": null, "dfilter": Infinity, "method_select": "plot"}, "module_select": "tools"}}]}
This issue also once arose in the extractor from time-series-management project [1]. Also we should have a look into #296 and #378 (closed) which are possibly tightly connected.
Edited by Bert Palmi could imagine a json saqc configuration, which then will probably look something like this:
{ "test": [ {"varname": "foo", "function": "flagRange", "kwargs": {"min": 1100}}, {"varname": "bar", "function": "flagMAD", "kwargs": {"window": "1H", "center": true}}, {"varname": "baz", "function": "flagRange", "kwargs": {"min": 0, "max": 990, "flag": 99}} ] }
Edited by Bert Palm- Bert Palm mentioned in merge request !717 (merged)
mentioned in merge request !717 (merged)
fixed by !717 (merged), will come with the next major release
- Bert Palm closed
closed
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