updating after check() and adding function deprecation

NAMESPACE

@@ -95,6 +95,7 @@ importFrom(readr,read_lines)
 importFrom(readr,write_delim)
 importFrom(readr,write_lines)
 importFrom(stats,density)
+importFrom(stats,lag)
 importFrom(stringr,str_detect)
 importFrom(stringr,str_remove)
 importFrom(stringr,str_remove_all)

R/globals.R

@@ -6,4 +6,6 @@ utils::globalVariables(c("%&&%", "%//%", ".", "crop", "day", "ecanopy", "eplant"
                          "tile", "time_out", "tmn", "tmpav", "tmx", "topo", "val_max", "val_mean",
                          "val_min", "value", "value_sum", "var", "var1", "var2", "var3", "var4", "var5",
                          "wndspd", "yr", "rhum", "rm_skp", "Date", "Values", "surq_gen", "latq", "perc",
-                         "description", "flo", "..density.."))
+                         "description", "flo", "..density..", "wateryld", "cn", "sw_final", "esr", "mmdd",
+                         "lu_mgt_ini", "has_suffix", "suffix_upd", "lu_mgt_upd", "schedule_upd",
+                         "plnt_com_upd", "n_chr"))

R/plot_hru_pw.R

@@ -58,6 +58,7 @@ get_hru_id_by_attribute <- function(sim_verify, lum = NULL, mgt = NULL, soil = N
 #' @export
 #'
 plot_hru_pw_day <- function(sim_verify, hru_id, var, title = "", years = 1900:2100) {
+  .Deprecated("plot_hru_pw")
   plot_data <- sim_verify$hru_pw_day %>%
     filter(unit %in% hru_id) %>%
     filter(yr %in% years) %>%
@@ -104,6 +105,7 @@ plot_hru_pw_day <- function(sim_verify, hru_id, var, title = "", years = 1900:21
 #' }
 
 plot_hru_var <- function(sim_verify, hru_id, var, period = "day", fn_summarize = "mean"){
+  .Deprecated("plot_hru_pw")
   options(dplyr.summarise.inform = FALSE)
   df <- sim_verify$hru_pw_day[sim_verify$hru_pw_day$unit %in% hru_id, c("unit", "yr", "mon", "day", var)]
   ##Aggregating data by time step

R/print_mgt.R

@@ -52,6 +52,7 @@ print_triggered_mgt <- function(sim_verify, hru_id, years = 1900:2100) {
 #' @importFrom purrr map
 #' @importFrom stringr str_sub str_remove
 #' @importFrom readr write_delim write_lines
+#' @importFrom stats lag
 #'
 #' @export
 #'