plot_ecxsys.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plot_ecxsys.R, R/plot_stress.R,
%   R/plot_survival.R
\name{plot_ecxsys}
\alias{plot_ecxsys}
\alias{plot_stress}
\alias{plot_survival}
\title{Plot the results of the ECx-SyS model}
\usage{
plot_stress(
  model,
  which = c("sys_tox", "sys_tox_observed", "sys_tox_env", "sys_tox_env_observed"),
  show_legend = FALSE,
  xlab = "concentration",
  ylab = "stress",
  main = NULL
)

plot_survival(
  model,
  which = c("survival_tox", "survival_tox_sys", "survival_tox_observed",
    "survival_tox_env", "survival_tox_env_sys", "survival_tox_env_observed"),
  show_legend = FALSE,
  xlab = "concentration",
  ylab = "survival",
  main = NULL
)
}
\arguments{
\item{model}{The model object returned from \code{\link{ecxsys}}.}

\item{which}{A vector of curve names to plot. Allowed are all values of
\code{names(model$curves)} except \code{"concentration"}. See the
\emph{Value} section of \code{\link{predict_ecxsys}} for descriptions of
these names. Additionally, you can use \code{"survival_tox_observed"} and
\code{"survival_tox_env_observed"} for the observed survival and
\code{"sys_tox_observed"} and \code{"sys_tox_env_observed"} for the
observed Sys. Use \code{"all"} to plot everything or \code{NA} to only draw
the axis and labels. Invalid names will be silently ignored.}

\item{show_legend}{Should the plot include a legend? Defaults to \code{FALSE}
because it may cover some parts of the plot depending on the plot size and
the number of elements shown.}

\item{xlab, ylab, main}{Axis labels and title.}
}
\value{
None
}
\description{
Plot the observed and modeled survivals and stresses.
}
\examples{
model <- ecxsys(
    concentration = c(0, 0.05, 0.5, 5, 30),
    hormesis_concentration = 0.5,
    survival_tox_observed = c(90, 81, 92, 28, 0),
    survival_tox_env_observed = c(29, 27, 33, 5, 0)
)
plot_survival(model, show_legend = TRUE)
plot_stress(model, show_legend = TRUE)

# Plot all curves:
plot_survival(model, which = "all")
plot_stress(model, which = "all")

# Plot only some selected curves:
plot_survival(model, which = c("survival_tox_sys", "survival_tox_env_sys"))
plot_stress(model, which = c("sys_tox", "sys_tox_env"))

# Plot only the observed values:
plot_survival(model, which = c("survival_tox_observed", "survival_tox_env_observed"))
plot_stress(model, which = c("sys_tox_observed", "sys_tox_env_observed"))
}